Unipept 3.1 changelog
posted on 2015-12-11
Unipept 3.1 consists of 84 commits and 75 changed files with 1,158 additions and 921 deletions. This includes these updates:
- added
- UniProt proteomes as data source for the peptidome analysis instead of assemblies
- added
- Type strains and reference proteomes markers in the proteome selector
- improved
- The loading speed of proteomes by 3 to 5 times
- improved
- The unique peptidome calculation speed of proteomes by 5 to 25 times
- improved
- The sequence download speed of peptidomes by 3 to 5 times
- improved
- The taxon invalidation rules for viruses
- fixed
- an issue where virus names were abbreviated in the peptidome analysis where they shouldn't
- fixed
- a bug where the API could return an error 500 in an obscure case
- fixed
- a bug where the invalid input would result in an error 500 when converting peptides
- fixed
- a bug where the TPA would crash for non-ascii input
- updated
- rails to 4.2.5
- added
- Our Bioinformatics publication
- improved
- The peptidome clustering to improve speed up to 30 times
- fixed
- An issue with the "Download Data" button of the unique peptide finder
- updated
- UniProt to 2016.01
- updated
- UniProt to 2016.02
- added
- Protein download from the Unique Peptide Finder
- updated
- UniProt to 2016.05