Unipept 3.1 changelog

posted on 2015-12-11

Unipept 3.1 consists of 84 commits and 75 changed files with 1,158 additions and 921 deletions. This includes these updates:
added
UniProt proteomes as data source for the peptidome analysis instead of assemblies
added
Type strains and reference proteomes markers in the proteome selector
improved
The loading speed of proteomes by 3 to 5 times
improved
The unique peptidome calculation speed of proteomes by 5 to 25 times
improved
The sequence download speed of peptidomes by 3 to 5 times
improved
The taxon invalidation rules for viruses
fixed
an issue where virus names were abbreviated in the peptidome analysis where they shouldn't
fixed
a bug where the API could return an error 500 in an obscure case
fixed
a bug where the invalid input would result in an error 500 when converting peptides
fixed
a bug where the TPA would crash for non-ascii input
updated
rails to 4.2.5
3.1.1 - 2016-02-01
added
Our Bioinformatics publication
improved
The peptidome clustering to improve speed up to 30 times
fixed
An issue with the "Download Data" button of the unique peptide finder
updated
UniProt to 2016.01
3.1.2 - 2016-02-23
updated
UniProt to 2016.02
3.1.3 - 2016-06-08
added
Protein download from the Unique Peptide Finder
updated
UniProt to 2016.05