Unipept 3.0 changelog

posted on 2015-07-31

Unipept 3.0 consists of 438 commits and 337 changed files with 10,504 additions and 5,978 deletions. This includes these updates:
added
A completely new redesign
added
Use Assemblies instead of Bioprojects as data source for the proteomes
added
A command line tool and documentation
added
Auto-resume for a previous peptidome analysis
added
Draft genomes to the peptidome analysis
added
Type strain info to the peptidome analysis
added
A new method of adding proteomes to the peptidome analysis
added
Shift + click on a node to expand all treeviews
added
A notification system
added
Protein names to the tryptic peptide analysis results
added
Protein names to the pept2prot API output
added
The possibility to leave an email address on encountering an error
added
The UniProt version in the footer
added
A rewritten version of the uniprot parser using make files and berkeley DB
added
Copy to clipboard button for Tryptic Peptide Analysis
added
An open in UniProt button for Tryptic Peptide Analysis
fixed
An issue where the names of "My proteomes" were incorrectly abbreviated in some cases
fixed
An issue where IndexedDB was broken in Safari
fixed
An issue where the input order was not preserved for the taxonomy API call
fixed
A bug where the my proteomes popover wouldn't open once a pancore popover was shown
fixed
A bug where the pancore popover was still present after a remove all
fixed
An issue where text was selected during drag-to-reorder in the pancore graph
fixed
An issue where a few JavaScript errors were shown when loading the TPA tree
fixed
An issue where the application crashed when a user submitted non-ascii characters in the multi-peptide analysis
updated
ruby to 2.2.2
updated
rails to 4.2.3
updated
D3.js to 3.5.5
updated
bootstrap to 3.3.5
3.0.1 - 2015-08-01
fixed
A bug where the JavaScript code might crash while updating My Proteomes
3.0.2 - 2015-08-03
fixed
A bug where the Save Image popover was not clickable
fixed
A spacing issue in the peptidome clustering tooltip
fixed
An issue with the font sizes in the peptidome clustering visualisations
3.0.3 - 2015-08-07
fixed
A bug where peptidome analysis became unresponsive after using the "clear all"-button in IE11
fixed
An issue with the autosort tooltip in Firefox and IE
3.0.4 - 2015-08-12
fixed
A bug where searching for a combined peptide in the TPA might cause a crash