News
Unipept 4.3
posted on 2020-04-15
Unipept 4.3 has just been released and contains these major additions:
- Load and process multiple samples at once with the metaproteomics analysis tool.
- Compare multiple samples with each other using the new heatmap.
- Functional analysis has been expanded with support for InterPro annotations.
- UniProt updated to version 2020.01
Unipept 4.3 changelog
posted on 2020-04-15
Unipept 4.3 consists of 1221 commits and 265 changed files with 22,851 additions and 13,029 deletions. This includes these updates:
- added
- support for processing multiple samples at once for Metaproteomics Analysis
- added
- a completely new comparative analysis for Metaproteomics Analysis
- added
- support for InterPro annotations in functional analysis
- improved
- Tryptic Peptide Analysis with new matched proteins overview.
- improved
- Completely rewritten Metaproteomics Analysis in TypeScript with Vue and Vuetify.
- improved
- Completely rewritten Tryptic Peptide Analysis in TypeScript with Vue and Vuetify.
- improved
- error handling and user notification in case network requests fail
- improved
- functional analysis overview with new, interactive, data tables.
- removed
- external links to PeptideAtlas and PRIDE for proteins in Tryptic Peptide Analysis
- improved
- form validation for peptide in Tryptic Peptide Analysis
- fixed
- filtering by rank / namespace in heatmap wizards
- fixed
- positioning of table in heatmap wizards
- fixed
- crash in backend when looking up specific proteins in Tryptic Peptide Analysis
- fixed
- crash in backend when processing data without equateIl-parameter
-
API/CLI related update
-
API/CLI related update
- fixed
- crash when reloading datasets from local storage
- fixed
- crash when exporting images in Firefox or Safari
Unipept 4.0
posted on 2019-01-21
Unipept 4.0 includes these major updates:
Check the release notes for a full list of changes.
- A completely new functional analysis tool
- An updated database based on UniProt 2018.06
Check the release notes for a full list of changes.
Unipept 4.0 changelog
posted on 2018-08-28
Unipept 4.0 consists of 272 commits and 91 changed files with 7,882 additions and 1,026 deletions. This includes these updates:
- added
- a completely new functional analysis view for Metaproteomics
- added
- a completely new functional analysis view for Tryptic peptide analysis
- improved
- the waiting expirience of a Metaproteomics Analysis
- improved
- strain names in peptidome analysis to be more clear
- fixed
- an issue that caused some proteome names to be cut off at a certain length
- improved
- the confidentiality of your metaproteomics datasets
- improved
- the test coverage of our frontend code
- improved
- the pipeline to work for larger Uniprot releases
- updated
- various dependencies
- updated
- to UniProt 2018.06
- added
- extra functional information to the API
Unipept 3.3
posted on 2017-11-14
Unipept 3.3 includes these major updates:
- a complete rewrite of the metaproteomics analysis
- an updated database based on UniProt 2017.10
Unipept 3.3
posted on 2017-11-14
Unipept 3.3 consists of 137 commits and 128 changed files with 9,244 additions and 3,820 deletions. This includes these updates:
- improved
- completely rewrite the metaproteome analysis
- improved
- restructure all javascript code
- fixed
- an issue with the copy to clipboard button
- fixed
- a crash when searching for an empty query
- updated
- to rails 5.1
- updated
- to UniProt 2017.10
- fixed
- An issue with an incompatible JavaScript file
- fixed
- An issue with the API "try it" feature
- improved
- query performance of proteome loading
- improved
- the proteome preload scripts
- improved
- faster and more correct missed cleavage handling
- improved
- the MPA progress indication
- removed
- the obsolete export checkbox on the MPA form
- fixed
- An issue with the form help tooltips on the MPA result page
- fixed
- An issue with the treemap colors
- fixed
- An issue with the sunburst visualisation
- fixed
- An issue by adding a fetch polyfill
Unipept 3.2
posted on 2017-08-22
Unipept 3.2 includes these major updates:
Check the release notes for a full list of changes.
- https and rails 5 support
- an updated database based on UniProt 2017.05
Check the release notes for a full list of changes.
Unipept 3.2 changelog
posted on 2017-06-27
Unipept 3.2 consists of 147 commits and 150 changed files with 1,983 additions and 1,350 deletions. This includes these updates:
- added
- a configure script for the make file
- added
- ec number and go term information to the database
- improved
- the performance of downloading proteome data
- improved
- the error resilience of the make file and scripts
- fixed
- an issue where not all type strains were added to the proteomes
- fixed
- an issue where the unique peptide finder could crash when requesting 0 sequences
- updated
- the publications section and about page
- updated
- to https and http2
- updated
- to rails 5
- updated
- to ruby 2.4
- updated
- to UniProt 2017.05
Unipept 3.1
posted on 2016-06-08
Unipept 3.1 includes these major updates:
Check the release notes for a full list of changes.
- a faster peptidome analysis based on UniProt proteomes
- an updated database based on UniProt 2015.12
Check the release notes for a full list of changes.
Unipept 3.1 changelog
posted on 2015-12-11
Unipept 3.1 consists of 84 commits and 75 changed files with 1,158 additions and 921 deletions. This includes these updates:
- added
- UniProt proteomes as data source for the peptidome analysis instead of assemblies
- added
- Type strains and reference proteomes markers in the proteome selector
- improved
- The loading speed of proteomes by 3 to 5 times
- improved
- The unique peptidome calculation speed of proteomes by 5 to 25 times
- improved
- The sequence download speed of peptidomes by 3 to 5 times
- improved
- The taxon invalidation rules for viruses
- fixed
- an issue where virus names were abbreviated in the peptidome analysis where they shouldn't
- fixed
- a bug where the API could return an error 500 in an obscure case
- fixed
- a bug where the invalid input would result in an error 500 when converting peptides
- fixed
- a bug where the TPA would crash for non-ascii input
- updated
- rails to 4.2.5
- added
- Our Bioinformatics publication
- improved
- The peptidome clustering to improve speed up to 30 times
- fixed
- An issue with the "Download Data" button of the unique peptide finder
- updated
- UniProt to 2016.01
- updated
- UniProt to 2016.02
- added
- Protein download from the Unique Peptide Finder
- updated
- UniProt to 2016.05