News

Unipept 4.3

posted on 2020-04-15

Unipept 4.3 has just been released and contains these major additions:
  • Load and process multiple samples at once with the metaproteomics analysis tool.
  • Compare multiple samples with each other using the new heatmap.
  • Functional analysis has been expanded with support for InterPro annotations.
  • UniProt updated to version 2020.01

Unipept 4.3 changelog

posted on 2020-04-15

Unipept 4.3 consists of 1221 commits and 265 changed files with 22,851 additions and 13,029 deletions. This includes these updates:
added
support for processing multiple samples at once for Metaproteomics Analysis
added
a completely new comparative analysis for Metaproteomics Analysis
added
support for InterPro annotations in functional analysis
improved
Tryptic Peptide Analysis with new matched proteins overview.
improved
Completely rewritten Metaproteomics Analysis in TypeScript with Vue and Vuetify.
improved
Completely rewritten Tryptic Peptide Analysis in TypeScript with Vue and Vuetify.
improved
error handling and user notification in case network requests fail
improved
functional analysis overview with new, interactive, data tables.
removed
external links to PeptideAtlas and PRIDE for proteins in Tryptic Peptide Analysis
4.3.2 - 20-04-2020
improved
form validation for peptide in Tryptic Peptide Analysis
fixed
filtering by rank / namespace in heatmap wizards
fixed
positioning of table in heatmap wizards
fixed
crash in backend when looking up specific proteins in Tryptic Peptide Analysis
fixed
crash in backend when processing data without equateIl-parameter
4.3.3 - 20-04-2020
API/CLI related update
4.3.4 - 20-04-2020
API/CLI related update
4.3.5 - 29-04-2020
fixed
crash when reloading datasets from local storage
fixed
crash when exporting images in Firefox or Safari

Unipept 4.0

posted on 2019-01-21

Unipept 4.0 includes these major updates:
  • A completely new functional analysis tool
  • An updated database based on UniProt 2018.06
update 4.1.0: add extra functional information to the API.
Check the release notes for a full list of changes.

Unipept 4.0 changelog

posted on 2018-08-28

Unipept 4.0 consists of 272 commits and 91 changed files with 7,882 additions and 1,026 deletions. This includes these updates:
added
a completely new functional analysis view for Metaproteomics
added
a completely new functional analysis view for Tryptic peptide analysis
improved
the waiting expirience of a Metaproteomics Analysis
improved
strain names in peptidome analysis to be more clear
fixed
an issue that caused some proteome names to be cut off at a certain length
improved
the confidentiality of your metaproteomics datasets
improved
the test coverage of our frontend code
improved
the pipeline to work for larger Uniprot releases
updated
various dependencies
updated
to UniProt 2018.06
4.1.0 - 2019-01-21
added
extra functional information to the API

Unipept 3.3

posted on 2017-11-14

Unipept 3.3 includes these major updates:
  • a complete rewrite of the metaproteomics analysis
  • an updated database based on UniProt 2017.10
Check the release notes for a full list of changes.

Unipept 3.3

posted on 2017-11-14

Unipept 3.3 consists of 137 commits and 128 changed files with 9,244 additions and 3,820 deletions. This includes these updates:
improved
completely rewrite the metaproteome analysis
improved
restructure all javascript code
fixed
an issue with the copy to clipboard button
fixed
a crash when searching for an empty query
updated
to rails 5.1
updated
to UniProt 2017.10
3.3.1 - 2017-11-14
fixed
An issue with an incompatible JavaScript file
3.3.2 - 2017-11-14
fixed
An issue with the API "try it" feature
3.3.3 - 2017-11-15
improved
query performance of proteome loading
improved
the proteome preload scripts
improved
faster and more correct missed cleavage handling
improved
the MPA progress indication
removed
the obsolete export checkbox on the MPA form
fixed
An issue with the form help tooltips on the MPA result page
fixed
An issue with the treemap colors
3.3.4 - 2017-11-15
fixed
An issue with the sunburst visualisation
3.3.5 - 2017-12-11
fixed
An issue by adding a fetch polyfill

Unipept 3.2

posted on 2017-08-22

Unipept 3.2 includes these major updates:
  • https and rails 5 support
  • an updated database based on UniProt 2017.05
update 3.2.1: update to UniProt 2017.07
Check the release notes for a full list of changes.

Unipept 3.2 changelog

posted on 2017-06-27

Unipept 3.2 consists of 147 commits and 150 changed files with 1,983 additions and 1,350 deletions. This includes these updates:
added
a configure script for the make file
added
ec number and go term information to the database
improved
the performance of downloading proteome data
improved
the error resilience of the make file and scripts
fixed
an issue where not all type strains were added to the proteomes
fixed
an issue where the unique peptide finder could crash when requesting 0 sequences
updated
the publications section and about page
updated
to https and http2
updated
to rails 5
updated
to ruby 2.4
updated
to UniProt 2017.05

Unipept 3.1

posted on 2016-06-08

Unipept 3.1 includes these major updates:
  • a faster peptidome analysis based on UniProt proteomes
  • an updated database based on UniProt 2015.12
update 3.1.3: update to UniProt 2016.05
Check the release notes for a full list of changes.

Unipept 3.1 changelog

posted on 2015-12-11

Unipept 3.1 consists of 84 commits and 75 changed files with 1,158 additions and 921 deletions. This includes these updates:
added
UniProt proteomes as data source for the peptidome analysis instead of assemblies
added
Type strains and reference proteomes markers in the proteome selector
improved
The loading speed of proteomes by 3 to 5 times
improved
The unique peptidome calculation speed of proteomes by 5 to 25 times
improved
The sequence download speed of peptidomes by 3 to 5 times
improved
The taxon invalidation rules for viruses
fixed
an issue where virus names were abbreviated in the peptidome analysis where they shouldn't
fixed
a bug where the API could return an error 500 in an obscure case
fixed
a bug where the invalid input would result in an error 500 when converting peptides
fixed
a bug where the TPA would crash for non-ascii input
updated
rails to 4.2.5
3.1.1 - 2016-02-01
added
Our Bioinformatics publication
improved
The peptidome clustering to improve speed up to 30 times
fixed
An issue with the "Download Data" button of the unique peptide finder
updated
UniProt to 2016.01
3.1.2 - 2016-02-23
updated
UniProt to 2016.02
3.1.3 - 2016-06-08
added
Protein download from the Unique Peptide Finder
updated
UniProt to 2016.05