The umgap taxa2tree command, similar to the unipept taxa2tree command, takes one or more taxon IDs as input and returns a visualized taxonomic tree of these taxa using the Unipept API server.

Usage

The input is given in a FASTA format on standard input. Each FASTA record contains one taxon ID. A HTML file is written to standard output containing a visualization of the taxonomic tree containing all these taxa. With -u, a URL to the visualization hosted online is printed instead.

$ cat input.txt
>header1
817
329854
1099853
$ umgap taxa2tree < input.txt > output.html
$ umgap taxa2tree --url < input.txt
https://bl.ocks.org/a686a37e1dcd43dd4ec7d467487bd6a1
-h / --help
Prints help information
-u / --url
Host the result online and return the URL
-V / --version
Prints version information