umgap taxa2tree
Visualizes a stream of taxon IDs using the Unipept API.
The umgap taxa2tree command, similar to the unipept taxa2tree command, takes one or more
taxon IDs as input and returns a visualized taxonomic tree of these taxa using the Unipept API server.
Usage
The input is given in a FASTA format on standard input. Each FASTA record contains one taxon ID. A HTML file is written to standard output containing a visualization of the taxonomic tree containing all these taxa. With -u, a URL to the visualization hosted online is printed instead.
$ cat input.txt >header1 817 329854 1099853 $ umgap taxa2tree < input.txt > output.html $ umgap taxa2tree --url < input.txt https://bl.ocks.org/a686a37e1dcd43dd4ec7d467487bd6a1
- -h / --help
- Prints help information
- -u / --url
- Host the result online and return the URL
- -V / --version
- Prints version information