Builds an index mapping short strings to taxon IDs
umgap buildindex command takes tab-separated strings and taxon IDs, and creates a
finite state transducer (FST) of this mapping.
The input is given on standard input. It should be in a TSV format with two columns, ordered by the first. The unique strings in the first column should be mapped to the integers (taxon IDs) in the second column. A binary file with a compressed mapping is written to standard output.
$ cat input.tsv AAAAA 2759 BBBBBB 9153 $ umgap buildindex < input.tsv > tiny.index $ umgap printindex tiny.index AAAAA 2759 BBBBBB 9153
- -h / --help
- Prints help information
- -V / --version
- Prints version information